python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_0.n_67.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_0.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_1.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_4.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_8.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_0.n_67.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_0.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_1.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_4.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_8.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.CWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.PWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_0.n_67.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_0.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_1.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_2.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_4.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_5.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_6.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_7.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_8.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_0.n_67.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_0.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_1.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_2.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_4.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_5.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_6.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_7.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_8.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.CWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.PWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_10.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_11.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_12.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_13.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_14.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_4.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_10.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_11.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_12.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_13.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_14.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_15.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_16.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_17.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_18.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_19.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_20.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_21.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_22.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_23.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_2.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_3.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_5.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_6.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_7.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_8.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_3.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_5.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_6.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_7.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_8.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.CWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_10.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_11.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_12.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_13.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_14.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_15.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_16.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_17.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_18.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_19.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_1.n_662.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_20.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_21.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_22.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_23.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_24.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_25.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_2.n_648.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_3.n_568.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_4.n_383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_5.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_6.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_7.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_8.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.PWM.meme motif-alignments-all-vs-all/SP1/SP1-201-vs-Hughes_GR_models_SP1.bestfold.profile.pattern_9.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.CWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_10.n_379.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_11.n_378.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_12.n_358.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_13.n_332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_14.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_15.n_267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_16.n_251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_17.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_18.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_19.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_1.n_1143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_20.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_21.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_22.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_23.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_24.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_25.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_26.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_27.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_28.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_29.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_2.n_848.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_30.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_31.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_32.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_33.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_34.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_35.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_36.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_37.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_38.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_39.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_3.n_698.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_40.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_4.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_5.n_557.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_6.n_550.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_7.n_495.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_8.n_442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.PWM.meme motif-alignments-all-vs-all/SP2/SP2-201-vs-Hughes_GR_models_SP2.bestfold.profile.pattern_9.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.CWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_10.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_11.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_12.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_13.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_14.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_15.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_16.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_17.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_18.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_19.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_1.n_707.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_20.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_21.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_22.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_23.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_24.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_25.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_26.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_27.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_28.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_29.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_2.n_515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_3.n_491.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_4.n_487.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_5.n_450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_6.n_396.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_7.n_358.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_8.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.PWM.meme motif-alignments-all-vs-all/SP4/SP4-201-vs-Hughes_GR_models_SP4.bestfold.profile.pattern_9.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_3.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_4.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_5.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_6.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_8.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_10.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_12.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_13.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_14.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_15.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_16.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_17.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_18.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_5.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_6.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_7.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_8.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_9.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_10.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_11.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_12.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_13.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_14.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_15.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_16.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_17.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_18.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_19.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_20.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_21.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_22.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_23.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_24.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_25.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_26.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_27.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_28.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_29.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_30.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_31.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_32.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_33.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_34.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_35.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_36.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_37.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_38.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_39.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_40.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_41.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_42.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_43.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_44.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_45.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_46.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_47.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_48.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_49.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_50.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_51.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_52.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_7.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_8.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_9.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.CWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_10.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_12.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.PWM.meme motif-alignments-all-vs-all/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_9.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-201-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-202-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-205-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-212-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_10.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_11.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_12.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_13.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_14.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_15.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_16.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_17.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_18.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_19.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_1.n_586.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_20.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_21.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_22.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_23.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_24.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_25.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_26.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_27.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_28.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_29.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_2.n_311.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_30.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_3.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_4.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_5.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_6.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_7.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_8.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM.meme motif-alignments-all-vs-all/MAZ/MAZ-216-vs-Hughes_GR_models_MAZ.bestfold.profile.pattern_9.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.CWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_14.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_16.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_17.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_18.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_19.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_20.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_10.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_11.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_12.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_13.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_14.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_15.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_16.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_17.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_5.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_6.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_7.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_8.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.PWM.meme motif-alignments-all-vs-all/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_9.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_10.n_911.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_11.n_902.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_12.n_900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_13.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_14.n_855.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_15.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_16.n_795.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_17.n_786.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_18.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_19.n_709.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_1.n_1484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_20.n_673.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_21.n_613.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_22.n_598.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_23.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_24.n_579.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_25.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_26.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_27.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_28.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_29.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_2.n_1422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_30.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_31.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_32.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_33.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_34.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_35.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_36.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_37.n_424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_38.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_39.n_393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_3.n_1136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_40.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_41.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_42.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_43.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_44.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_45.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_46.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_47.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_4.n_1065.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_5.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_6.n_977.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_7.n_959.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_8.n_941.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_GR_models_CTCF.bestfold.profile.pattern_9.n_924.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_0.n_4131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_10.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_11.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_1.n_1726.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_2.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_3.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_4.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_5.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_6.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_7.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_8.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN16/ZSCAN16-201-vs-Hughes_GR_models_ZSCAN16.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.CWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.PWM.meme motif-alignments-all-vs-all/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_10.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_11.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_12.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_13.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_14.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_15.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_16.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_17.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_2.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_3.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_4.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_5.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_6.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_8.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_9.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.CWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_10.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_11.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_12.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_13.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_14.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_15.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_16.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_17.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_18.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_19.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_1.n_926.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_2.n_599.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_3.n_595.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_4.n_518.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_5.n_458.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_6.n_357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_7.n_310.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_8.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.PWM.meme motif-alignments-all-vs-all/ZNF519/ZNF519-207-vs-ChipExo_models_ZNF519.bestfold.profile.pattern_9.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_11.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_12.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_13.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_2.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_3.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_4.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_5.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_6.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_8.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_0.n_67.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_0.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_1.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_4.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_8.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_0.n_67.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_0.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_1.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_4.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM6-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM6.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/PRDM6/PRDM6-201-vs-Hughes_GR_models_PRDM6.bestfold.profile.pattern_8.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.CWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_10.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_11.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_13.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_14.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_7.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_8.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.PWM.meme motif-alignments-all-vs-all/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_9.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_10.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_7.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_8.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.CWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_15.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_16.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_17.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_18.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_19.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_279.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.PWM.meme motif-alignments-all-vs-all/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_10.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_4.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_6.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_8.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.CWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_10.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_11.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_12.n_395.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_13.n_394.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_14.n_373.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_15.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_16.n_337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_17.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_18.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_19.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_1.n_1470.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_20.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_21.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_22.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_23.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_2.n_1379.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_3.n_1213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_4.n_1023.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_5.n_996.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_6.n_963.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_7.n_868.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_8.n_508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.PWM.meme motif-alignments-all-vs-all/ZNF479/ZNF479-201-vs-ChipExo_models_ZNF479.bestfold.profile.pattern_9.n_433.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_10.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_4.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_5.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_7.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_8.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_9.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_10.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_11.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_12.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_13.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_14.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_15.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_16.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_17.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_18.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_19.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_20.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_21.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_22.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_23.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_24.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_25.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_6.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_7.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_8.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM.meme motif-alignments-all-vs-all/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_9.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.CWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_10.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_14.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.PWM.meme motif-alignments-all-vs-all/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.CWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_10.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_11.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_12.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.PWM.meme motif-alignments-all-vs-all/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_9.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.CWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_0.n_782.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_10.n_353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_11.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_12.n_344.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_13.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_14.n_295.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_15.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_16.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_17.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_18.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_19.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_1.n_554.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_20.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_21.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_22.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_23.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_24.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_25.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_26.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_27.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_28.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_29.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_2.n_501.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_30.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_31.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_32.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_33.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_34.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_35.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_36.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_37.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_38.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_39.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_3.n_468.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_40.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_41.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_42.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_43.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_44.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_45.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_4.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_5.n_433.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_6.n_417.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_7.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_8.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.PWM.meme motif-alignments-all-vs-all/ZNF490/ZNF490-201-vs-Hughes_GR_models_ZNF490.bestfold.profile.pattern_9.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_14.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_15.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_17.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_18.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_19.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_20.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_21.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_22.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_23.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_24.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.CWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_0.n_1978.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_10.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_11.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_12.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_13.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_14.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_15.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_16.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_17.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_18.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_19.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_1.n_1511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_20.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_21.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_22.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_23.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_24.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_25.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_26.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_27.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_28.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_29.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_2.n_1410.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_30.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_31.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_32.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_33.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_34.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_35.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_36.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_37.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_38.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_39.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_3.n_1207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_40.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_41.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_42.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_43.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_44.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_45.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_46.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_47.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_48.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_49.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_4.n_1150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_50.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_51.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_52.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_53.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_54.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_55.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_56.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_57.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_58.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_59.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_5.n_1108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_60.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_61.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_62.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_63.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_64.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_65.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_66.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_67.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_68.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_69.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_6.n_727.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_70.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_71.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_72.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_73.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_74.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_75.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_76.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_77.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_78.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_79.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_7.n_375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_80.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_81.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_82.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_83.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_8.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.PWM.meme motif-alignments-all-vs-all/ZNF121/ZNF121-201-vs-Hughes_GR_models_ZNF121.bestfold.profile.pattern_9.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.CWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_10.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_11.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_12.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_13.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_14.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_15.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_16.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_17.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_18.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_19.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_1.n_871.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_20.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_21.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_22.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_2.n_746.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_3.n_572.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_4.n_451.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_5.n_400.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_6.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_7.n_377.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_8.n_371.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.PWM.meme motif-alignments-all-vs-all/KLF1/KLF1-201-vs-Hughes_GR_models_KLF1.bestfold.profile.pattern_9.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_13.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_8.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_9.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_0.n_511.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_10.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_12.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_13.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_14.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_1.n_500.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_2.n_425.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_3.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_4.n_357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_5.n_340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_6.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_7.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_8.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-ChipExo_models_ZNF680.bestfold.profile.pattern_9.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_10.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_11.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_12.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_13.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_14.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_15.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_17.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_8.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_9.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_11.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_10.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_11.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_12.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_13.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_14.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_6.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_7.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_8.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.CWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_10.n_669.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_11.n_644.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_12.n_642.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_13.n_634.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_14.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_15.n_610.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_16.n_597.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_17.n_559.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_18.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_19.n_529.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_1.n_1197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_20.n_523.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_21.n_486.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_22.n_482.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_23.n_478.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_24.n_464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_25.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_26.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_27.n_452.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_28.n_450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_29.n_354.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_2.n_1118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_30.n_339.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_31.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_32.n_337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_33.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_34.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_35.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_36.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_37.n_295.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_38.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_39.n_288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_3.n_989.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_40.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_41.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_42.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_43.n_268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_44.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_45.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_46.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_47.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_48.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_49.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_4.n_958.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_50.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_51.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_52.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_53.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_5.n_880.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_6.n_810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_7.n_687.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_8.n_686.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.PWM.meme motif-alignments-all-vs-all/SCRT1/SCRT1-201-vs-Hughes_GR_models_SCRT1.bestfold.profile.pattern_9.n_682.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.CWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_10.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_11.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_12.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_13.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_14.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_8.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.PWM.meme motif-alignments-all-vs-all/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_9.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_3.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_6.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_7.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_9.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_10.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_11.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_2.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_3.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_7.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_8.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_9.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_8.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-201-vs-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZFP64/ZFP64-205-vs-Hughes_GR_models_ZFP64.bestfold.profile.pattern_0.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_8.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.CWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_306.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.PWM.meme motif-alignments-all-vs-all/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.CWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.PWM.meme motif-alignments-all-vs-all/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_1.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_9.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_14.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_15.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_16.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.CWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.PWM.meme motif-alignments-all-vs-all/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_10.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_11.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_12.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_13.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_14.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_15.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_16.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_17.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_18.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_19.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_20.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_21.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_22.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_23.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_24.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_25.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_26.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_27.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_28.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_2.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_3.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_4.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_5.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_6.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_7.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_9.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_10.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_4.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_5.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_6.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.CWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_10.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_11.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_12.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_13.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_14.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_15.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_16.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_17.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_18.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_19.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_20.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_21.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_22.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_23.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_24.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_25.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_26.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_27.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_28.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_29.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_30.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_31.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_5.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_6.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_7.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_8.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.PWM.meme motif-alignments-all-vs-all/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_9.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_9.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.CWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_1693.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_14.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_16.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_676.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_645.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_439.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.PWM.meme motif-alignments-all-vs-all/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_12.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_6.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_7.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_1.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_2.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_3.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF22/ZNF22-201-vs-Hughes_GR_models_ZNF22.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.CWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_0.n_853.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_10.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_11.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_12.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_13.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_14.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_15.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_16.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_17.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_18.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_19.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_1.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_20.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_21.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_22.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_23.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_24.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_25.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_26.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_27.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_28.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_29.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_2.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_30.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_31.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_32.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_33.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_34.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_35.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_36.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_37.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_38.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_39.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_3.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_40.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_41.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_42.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_43.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_44.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_45.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_46.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_47.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_48.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_49.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_4.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_50.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_51.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_52.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_53.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_54.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_55.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_56.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_57.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_58.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_59.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_5.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_60.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_6.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_7.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_8.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF770-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.PWM.meme motif-alignments-all-vs-all/ZNF770/ZNF770-201-vs-Hughes_GR_models_ZNF770.bestfold.profile.pattern_9.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_980.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_879.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_7.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_8.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_3.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_4.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_5.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_7.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_9.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.CWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_4.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_6.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_8.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_10.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_11.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_12.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_13.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_14.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_15.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_17.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_18.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_19.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_20.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_7.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_8.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.PWM.meme motif-alignments-all-vs-all/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_9.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_10.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_12.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_3.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_4.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_5.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_6.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_7.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_8.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_9.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_323.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_11.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_12.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_13.n_297.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_14.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_15.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_16.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_17.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_18.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_19.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_20.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_21.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_22.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_23.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_24.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_534.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_411.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_391.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM.meme motif-alignments-all-vs-all/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.CWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_10.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_12.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_13.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_14.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_16.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_18.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_19.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_8.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.PWM.meme motif-alignments-all-vs-all/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_9.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_10.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_11.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_12.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_3.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_4.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_5.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_6.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_7.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_8.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_9.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_3.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_6.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_7.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_10.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_12.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_13.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_15.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_16.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_17.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_18.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_19.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_20.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_23.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_24.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_25.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_26.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_8.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_5.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.CWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_0.n_651.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_10.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_11.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_12.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_13.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_14.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_15.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_16.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_17.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_18.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_19.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_1.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_20.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_21.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_22.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_2.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_3.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_4.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_5.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_6.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_8.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_GR_models_ZNF467.bestfold.profile.pattern_9.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_10.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_11.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_12.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_13.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_14.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_15.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_16.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_17.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_18.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_1.n_1126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_20.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_2.n_914.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_3.n_803.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_4.n_680.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_5.n_540.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_6.n_537.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_7.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_8.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.PWM.meme motif-alignments-all-vs-all/ZNF467/ZNF467-201-vs-Hughes_NB_models_ZNF467.bestfold.profile.pattern_9.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_6.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_8.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_3.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_4.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-201-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_0.n_2557.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_10.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_1.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_2.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_3.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_4.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_5.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_6.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_7.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_8.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all/ZNF384/ZNF384-203-vs-Hughes_GR_models_ZNF384.bestfold.profile.pattern_9.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_0.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_10.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_11.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_12.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_1.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_2.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_3.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_4.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_5.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_6.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_7.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_8.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-ChipExo_models_ZNF382.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_10.n_754.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_11.n_746.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_12.n_727.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_13.n_678.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_14.n_664.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_15.n_654.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_16.n_529.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_17.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_18.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_19.n_417.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_1.n_1465.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_20.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_21.n_383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_22.n_368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_23.n_357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_24.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_25.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_26.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_27.n_251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_28.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_29.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_2.n_1314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_30.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_31.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_32.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_33.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_34.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_35.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_36.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_37.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_38.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_39.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_3.n_1122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_40.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_41.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_4.n_1072.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_5.n_857.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_6.n_831.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_7.n_821.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_8.n_820.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_GR_models_ZNF382.bestfold.profile.pattern_9.n_762.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_11.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_14.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_15.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_6.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_392.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_10.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_11.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_12.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_13.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_14.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_15.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_17.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_302.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_6.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_7.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_8.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_9.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.CWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.PWM.meme motif-alignments-all-vs-all/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_4.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.CWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_10.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_11.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_12.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_13.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_14.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_15.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_16.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_17.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_18.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_19.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_20.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_21.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_22.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_23.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_24.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_426.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_379.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_7.n_372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_8.n_359.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.PWM.meme motif-alignments-all-vs-all/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_9.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.CWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_11.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_12.n_257.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_13.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_14.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_15.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_16.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_17.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_18.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_19.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_20.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_21.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_22.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_23.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_24.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_25.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_26.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_27.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_28.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_392.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.PWM.meme motif-alignments-all-vs-all/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.CWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.PWM.meme motif-alignments-all-vs-all/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.CWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_11.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_12.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_13.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_14.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_15.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_16.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_17.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_18.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_20.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_21.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_22.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_23.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_24.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.PWM.meme motif-alignments-all-vs-all/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.CWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_10.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_11.n_372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_12.n_345.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_13.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_14.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_15.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_16.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_17.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_18.n_312.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_19.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_1.n_1832.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_20.n_294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_21.n_292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_22.n_282.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_23.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_24.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_25.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_26.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_27.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_28.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_29.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_2.n_930.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_30.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_31.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_32.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_33.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_34.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_35.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_36.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_37.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_38.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_39.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_3.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_40.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_41.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_42.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_43.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_44.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_45.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_4.n_830.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_5.n_521.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_6.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_7.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_8.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.PWM.meme motif-alignments-all-vs-all/EGR2/EGR2-201-vs-Hughes_GR_models_EGR2.bestfold.profile.pattern_9.n_390.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_10.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_11.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_13.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_14.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_15.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_16.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_17.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_18.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_19.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_20.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_21.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_22.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_23.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_24.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_25.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_26.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_27.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_28.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_29.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_2.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_30.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_31.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_32.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_33.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_34.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_35.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_36.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_37.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_38.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_39.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_3.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_40.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_41.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_42.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_43.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_4.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_5.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_6.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_7.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_8.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_9.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_12.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.CWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_11.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_12.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_13.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_14.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_15.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_16.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_17.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_18.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_19.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_20.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_5.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_6.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_7.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_8.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.PWM.meme motif-alignments-all-vs-all/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_9.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_10.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_11.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_12.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_13.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_14.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_15.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_16.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_17.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_18.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_19.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_1.n_670.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_20.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_21.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_22.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_23.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_24.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_25.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_26.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_27.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_28.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_29.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_2.n_497.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_30.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_31.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_32.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_33.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_34.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_35.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_36.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_37.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_38.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_39.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_3.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_40.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_41.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_42.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_43.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_44.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_45.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_46.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_47.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_48.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_49.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_4.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_50.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_51.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_52.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_53.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_5.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_6.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_7.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_8.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_GR_models_YY1.bestfold.profile.pattern_9.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_10.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_11.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_12.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_13.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_14.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_15.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_16.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_17.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_18.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_19.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_376.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_5.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_6.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_7.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_8.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM.meme motif-alignments-all-vs-all/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_9.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.CWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_394.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_12.n_354.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_13.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_14.n_230.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_15.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_16.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_17.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_1210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_703.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_694.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_591.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_586.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_509.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_502.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_449.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_13.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_14.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_15.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_17.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_18.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_19.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_20.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_21.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.PWM.meme motif-alignments-all-vs-all/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.CWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_10.n_420.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_11.n_415.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_12.n_414.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_13.n_404.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_14.n_395.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_15.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_16.n_371.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_17.n_355.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_18.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_19.n_339.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_1.n_928.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_20.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_21.n_296.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_22.n_281.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_23.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_24.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_25.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_26.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_27.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_28.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_29.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_2.n_862.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_30.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_31.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_32.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_33.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_34.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_35.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_36.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_37.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_38.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_39.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_3.n_798.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_40.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_41.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_4.n_569.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_5.n_532.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_6.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_7.n_481.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_8.n_477.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.PWM.meme motif-alignments-all-vs-all/ZNF534/ZNF534-202-vs-ChipExo_models_ZNF534.bestfold.profile.pattern_9.n_432.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_2.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_10.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_11.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_12.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_13.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_14.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_15.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_16.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_17.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_18.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_19.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_20.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_21.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_22.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_23.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_24.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_25.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_26.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_27.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_28.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_29.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_30.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_31.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_32.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_33.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_34.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_35.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_36.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_37.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_38.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_39.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_40.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_41.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_42.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_43.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_44.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_45.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_46.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_47.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_48.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_49.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_50.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_51.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_52.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_53.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_54.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_8.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_9.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.CWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_10.n_661.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_11.n_617.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_12.n_607.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_13.n_607.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_14.n_590.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_15.n_575.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_16.n_537.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_17.n_490.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_18.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_19.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_1.n_922.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_20.n_432.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_21.n_410.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_22.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_23.n_385.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_24.n_369.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_25.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_26.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_27.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_28.n_328.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_29.n_320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_2.n_824.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_30.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_31.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_32.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_33.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_34.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_35.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_36.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_37.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_3.n_797.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_4.n_787.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_5.n_782.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_6.n_728.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_7.n_707.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_8.n_695.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-ChipExo_models_ZIM3.bestfold.profile.pattern_9.n_664.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_0.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_10.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_11.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_12.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_13.n_250.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_14.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_15.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_16.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_17.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_18.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_19.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_1.n_597.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_20.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_21.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_22.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_23.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_24.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_25.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_26.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_27.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_28.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_29.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_2.n_492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_30.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_31.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_32.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_33.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_34.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_35.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_36.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_3.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_4.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_5.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_6.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_7.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_8.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.PWM.meme motif-alignments-all-vs-all/ZIM3/ZIM3-201-vs-Hughes_GR_models_ZIM3.bestfold.profile.pattern_9.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.CWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_10.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_11.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_13.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_14.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_15.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_16.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_17.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_18.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_6.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_7.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_8.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.PWM.meme motif-alignments-all-vs-all/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_9.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.CWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_10.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_11.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_12.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_13.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_14.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_15.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_16.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_17.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_18.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_19.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_20.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_21.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_22.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_23.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_24.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_25.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_6.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_7.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_8.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.PWM.meme motif-alignments-all-vs-all/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_9.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.CWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_2.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_3.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_4.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_5.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_7.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_10.n_699.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_11.n_682.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_12.n_599.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_13.n_591.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_14.n_567.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_15.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_16.n_481.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_17.n_464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_18.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_19.n_428.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_1.n_1347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_20.n_423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_21.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_22.n_374.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_23.n_372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_24.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_25.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_26.n_339.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_27.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_28.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_29.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_2.n_1321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_30.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_3.n_1289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_4.n_1197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_5.n_1185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_6.n_1054.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_7.n_830.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_8.n_824.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.PWM.meme motif-alignments-all-vs-all/ZNF322/ZNF322-201-vs-Hughes_NB_models_ZNF322.bestfold.profile.pattern_9.n_758.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.CWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_10.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_11.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_13.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_14.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_17.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_3.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_4.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_5.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_6.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_7.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_8.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.PWM.meme motif-alignments-all-vs-all/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_9.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_10.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_11.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_1.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_2.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_3.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_4.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_5.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_6.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_7.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_8.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_9.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_4.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_5.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_1.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_2.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_3.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_4.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_5.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_6.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_7.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_8.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all/KLF15/KLF15-201-vs-Hughes_GR_models_KLF15.bestfold.profile.pattern_9.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.CWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_10.n_299.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_11.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_12.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_13.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_14.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_15.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_16.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_17.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_18.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_19.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_463.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_20.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_21.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_22.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_23.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_24.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_448.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_440.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_4.n_425.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_5.n_411.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_6.n_389.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_7.n_354.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_8.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.PWM.meme motif-alignments-all-vs-all/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_9.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_1.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.CWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_1643.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_462.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_12.n_445.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_13.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_14.n_389.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_15.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_16.n_307.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_17.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_18.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_19.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_1382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_20.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_21.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_22.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_23.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_24.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_25.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_26.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_27.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_28.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_1313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_1142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_889.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_856.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_749.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_715.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_693.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.PWM.meme motif-alignments-all-vs-all/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_628.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.CWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_13.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_14.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_15.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_751.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_425.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_421.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_375.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_358.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_321.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.PWM.meme motif-alignments-all-vs-all/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_10.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_11.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_12.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_13.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_14.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_15.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_16.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_2.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_3.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_4.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_5.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_6.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_7.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_8.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_9.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.CWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_10.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_11.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_12.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_13.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_4.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_5.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_6.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_7.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_8.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.PWM.meme motif-alignments-all-vs-all/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_9.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.CWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_10.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_11.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_12.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_13.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_14.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_15.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_16.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_17.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_18.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_19.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_20.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_21.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_22.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_23.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_24.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_25.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_26.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_27.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_28.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_29.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_30.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_31.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_32.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_33.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_34.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_35.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_36.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_37.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_38.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_39.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_3.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_40.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_41.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_42.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_43.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_44.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_45.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_46.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_47.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_48.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_49.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_4.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_50.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_51.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_52.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_53.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_5.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_6.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_7.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_8.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.PWM.meme motif-alignments-all-vs-all/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_9.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_10.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_11.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_12.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_13.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_14.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_2.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_3.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_4.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_6.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_7.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_8.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_9.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_10.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_11.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_12.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_13.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_14.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_15.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_16.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_17.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_18.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_19.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_20.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_6.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_7.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_8.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_3.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_6.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_10.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_11.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_12.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_13.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_3.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_4.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_5.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_6.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_7.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_8.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_9.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_12.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_382.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_10.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_2.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_3.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_4.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_5.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_7.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_8.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_9.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_6.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_10.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_11.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_12.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_14.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_15.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_16.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_5.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_8.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_9.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_10.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_11.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_12.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_14.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_15.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_16.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_12.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_6.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_7.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.CWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_10.n_477.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_11.n_449.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_12.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_13.n_430.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_14.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_15.n_396.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_16.n_388.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_17.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_18.n_258.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_19.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_1.n_2129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_20.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_21.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_22.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_23.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_24.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_25.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_26.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_27.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_28.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_2.n_1284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_3.n_1123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_4.n_1018.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_5.n_1009.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_6.n_775.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_7.n_602.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_8.n_553.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.PWM.meme motif-alignments-all-vs-all/GLIS1/GLIS1-201-vs-Hughes_GR_models_GLIS1.bestfold.profile.pattern_9.n_521.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_10.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_11.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_12.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_13.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_14.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_15.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_16.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_17.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_18.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_19.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_20.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_21.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_22.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_23.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_24.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_25.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_26.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_27.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_28.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_29.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_30.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_31.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_32.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_33.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_34.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_35.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_36.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_37.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_38.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_39.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_40.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_41.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_42.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_43.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_6.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_7.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_9.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.CWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_1076.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_10.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_12.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_13.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_935.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_504.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_7.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_8.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.PWM.meme motif-alignments-all-vs-all/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_9.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_2.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_3.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_5.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_6.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_151.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_524.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM.meme motif-alignments-all-vs-all/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.CWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_10.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_301.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_5.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_6.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_7.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_8.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.PWM.meme motif-alignments-all-vs-all/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_9.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_2.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.CWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_748.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_10.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_11.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_12.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_13.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_14.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_15.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_16.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_17.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_18.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_19.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_20.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_426.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_378.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_312.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_5.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_6.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_7.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_8.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.PWM.meme motif-alignments-all-vs-all/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_9.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_2.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.CWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_10.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_11.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_12.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_13.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_14.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_15.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_16.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_17.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_18.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_6.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_7.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_8.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.PWM.meme motif-alignments-all-vs-all/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_9.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.CWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_3.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_4.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.PWM.meme motif-alignments-all-vs-all/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_5.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.CWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.PWM.meme motif-alignments-all-vs-all/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.CWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_10.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_11.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_12.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_13.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_14.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_15.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_16.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_17.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_18.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_19.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_20.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_21.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_22.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_23.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_4.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_5.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_6.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_7.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_8.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_9.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_15.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_16.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_17.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_18.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_19.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_20.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_21.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_22.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_23.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_24.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_25.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_26.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_27.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_28.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_29.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_30.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.PWM.meme motif-alignments-all-vs-all/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_10.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_11.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_12.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_13.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_14.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_15.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_16.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_17.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_9.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_0.n_2164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_10.n_529.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_11.n_516.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_12.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_13.n_499.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_14.n_496.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_15.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_16.n_412.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_17.n_400.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_18.n_396.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_19.n_377.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_1.n_1170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_20.n_374.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_21.n_360.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_22.n_347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_23.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_24.n_322.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_25.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_26.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_27.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_28.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_29.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_2.n_828.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_30.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_31.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_32.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_33.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_34.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_35.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_36.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_37.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_38.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_39.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_3.n_720.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_40.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_41.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_42.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_43.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_44.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_45.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_4.n_718.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_5.n_676.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_6.n_645.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_7.n_607.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_8.n_601.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_GR_models_ZNF317.bestfold.profile.pattern_9.n_552.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_512.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_6.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_7.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_8.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_9.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.CWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.PWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_0.n_625.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_2.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_3.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_4.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_5.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_6.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_7.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-ChipExo_models_ZNF257.bestfold.profile.pattern_8.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_5.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.CWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_10.n_373.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_11.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_12.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_13.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_14.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_15.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_16.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_17.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_18.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_994.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_874.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_862.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_742.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_502.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_7.n_490.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_8.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.PWM.meme motif-alignments-all-vs-all/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_9.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.CWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_10.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_11.n_391.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_12.n_365.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_13.n_333.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_14.n_279.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_15.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_16.n_262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_17.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_18.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_19.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_777.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_20.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_21.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_22.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_23.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_24.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_25.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_26.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_593.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_565.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_564.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_523.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_7.n_440.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_8.n_434.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.PWM.meme motif-alignments-all-vs-all/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_9.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.CWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.PWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.CWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_138.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.PWM.meme motif-alignments-all-vs-all/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_9.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_10.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_3.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_4.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_5.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_6.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_7.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_8.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM.meme motif-alignments-all-vs-all/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_9.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.CWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_10.n_329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_11.n_288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_12.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_13.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_14.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_15.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_16.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_734.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_565.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_525.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_488.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_372.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_7.n_345.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_8.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.PWM.meme motif-alignments-all-vs-all/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_9.n_332.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.CWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_0.n_646.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_10.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_11.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_12.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_13.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_14.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_15.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_16.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_17.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_18.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_19.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_1.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_20.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_21.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_22.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_2.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_3.n_350.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_4.n_297.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_5.n_268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_6.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_7.n_246.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_8.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP57-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.PWM.meme motif-alignments-all-vs-all/ZFP57/ZFP57-201-vs-ChipExo_models_ZFP57.bestfold.profile.pattern_9.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-202-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-206-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB/Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all/ZBTB48/ZBTB48-208-vs-Hughes_GR_models_ZBTB48.bestfold.profile.pattern_0.n_32.PWM